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adding sqlite to allow for astro notebook launch #5979

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merged 1 commit into from
Aug 20, 2024
Merged

adding sqlite to allow for astro notebook launch #5979

merged 1 commit into from
Aug 20, 2024

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shaneknapp
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@shaneknapp shaneknapp mentioned this pull request Aug 20, 2024
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@profjsb
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profjsb commented Aug 20, 2024

Thanks for tracking down the packaging bug. If we need to do future PRs, I'll make sure to install the jupyter-repo2docker package.

Once this is up on staging, I'll test it out.

@shaneknapp shaneknapp merged commit 64641af into berkeley-dsep-infra:staging Aug 20, 2024
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@shaneknapp shaneknapp deleted the fix-astro branch August 20, 2024 17:32
@shaneknapp
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ok, now it's failing in a new way:

/srv/conda/envs/notebook/lib/python3.11/subprocess.py:1016: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used
  self.stdout = io.open(c2pread, 'rb', bufsize)
[I 2024-08-20 17:58:48.413 SingleUserNotebookApp mixins:609] Starting jupyterhub single-user server version 3.1.1
[I 2024-08-20 17:58:48.413 SingleUserNotebookApp mixins:623] Extending jupyter_server.serverapp.ServerApp from jupyter_server 2.14.2
[I 2024-08-20 17:58:48.739 SingleUserNotebookApp utils:73] Extension package ipyparallel took 0.3132s to import
[W 2024-08-20 17:58:48.739 SingleUserNotebookApp utils:86] A `_jupyter_server_extension_points` function was not found in ipyparallel. Instead, a `_jupyter_server_extension_paths` function was found and will be used for now. This function name will be deprecated in future releases of Jupyter Server.
[W 2024-08-20 17:58:48.751 SingleUserNotebookApp manager:330] jupyter_offlinenotebook | error adding extension (enabled: True): The module 'jupyter_offlinenotebook' could not be found (No module named 'notebook.utils'). Are you sure the extension is installed?
    Traceback (most recent call last):
      File "/srv/conda/envs/notebook/lib/python3.11/site-packages/jupyter_server/extension/manager.py", line 323, in add_extension
        extpkg = ExtensionPackage(name=extension_name, enabled=enabled)
                 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
      File "/srv/conda/envs/notebook/lib/python3.11/site-packages/jupyter_server/extension/manager.py", line 187, in __init__
        self._load_metadata()
      File "/srv/conda/envs/notebook/lib/python3.11/site-packages/jupyter_server/extension/manager.py", line 202, in _load_metadata
        raise ExtensionModuleNotFound(msg) from None
    jupyter_server.extension.utils.ExtensionModuleNotFound: The module 'jupyter_offlinenotebook' could not be found (No module named 'notebook.utils'). Are you sure the extension is installed?

i'll open a jira for us to track this and will give you updates as they come. sorry about this!

@shaneknapp
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actually i think i got it... testing locally and then i'll make another PR.

@shaneknapp shaneknapp mentioned this pull request Aug 20, 2024
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@shaneknapp @profjsb